Article Text
Abstract
Background The laboratory diagnosis of P. jirovecii pneumonia (PCP) is typically based on microscopic observation of cysts and trophic forms on deep respiratory specimens. In low-income countries, access to bronchoalveolar lavage is limited, particularly for children, and PCP is usually a clinical diagnosis in HIV-positive infants. The use of different laboratory tests on more easily-obtained upper respiratory and venous blood samples could enhance laboratory-confirmed PCP diagnosis.
Methods PCP-PED is an ongoing ancillary-study of the EMPIRICAL trial (#NCT03915366), supported by the EDCTP2 Program and the European Union (TMA2020CDF-3217), which recruits HIV-positive infants hospitalized with severe pneumonia from 8 hospitals in Mozambique. Nasopharyngeal aspirates are processed for direct immunofluorescence microscopy (IFM) to detect P. jirovecii cysts and for quantitative polymerase chain reaction (qPCR) targeting kex-1 gene (Genesig real-time PCR kit). Plasma samples will be used for serologic quantification of (1–3)-β-D-glucan (BG) and Human Krebs Von Den Lungen-6 (KL-6) antigens.
Results In interim analysis as of March 2023, 61/151 (40.4%) participants recruited have qPCR and IFM results. Median age was 4.0 [IQR, 3.1–6.3] months and 47.5% (29/61) were female. Median HIV viral load and CD4% were 6.0 logs cp/mL [IQR, 5.9 -6.9] and 13.5% [IQR, 10.0–19.6], respectively. qPCR was positive in 45.9% (28/61) and 39.3% (11/28) were on cotrimoxazole prophylaxis prior to hospitalization. The median P. jirovecii fungal load on positive samples was 13,304 copies/mL [IQR, 3,975–61,484]. Among participants with positive qPCR, 25% (7/28) were IFM positive. All participants with negative qPCR results were IFM negative; no participants with positive IFM had negative qPCR results.
Conclusion Positivity rates for qPCR were higher than for IFM, suggesting superior sensitivity for P. jirovecii detection. Future analysis will focus on qPCR/IFM correlation, BG and KL-6 results, and P. jirovecii PCR fungal loads to attempt to differentiate colonization and infection.